- There are now 30 frames per second, much better than the 15-24fps of the original N64 cartridge
- The blurry pre-rendered bitmap Castletown is now a rendered environment. With several new remodelled building exteriors, but still maintains the old camera angle.
- The water effects of Lake Hylia have been improved.
- The fishing pond has been changed with more textures adding a more rocky appearance and a waterfall has been added.
- The tree wall has been replaced by three dimensional trees.
- All 2D backgrounds have been replaced by rendered 3D backdrops with greater detail.
- When viewed from Hyrule Field, Death Mountain is no longer a 2D cardboard cutout but a 3D model.
- Temple of Time interior has been remodelled including a visible ceiling.
- The inventory is now kept on the touchscreen and items may be equipped by the X and Y buttons.
- The ocarina is now permanently placed in an area on the lower left corner of the touchscreen.
- Due to a lack of rumble feature the Stone of Agony now emits a sound instead of the old “rumble” of the N64 controller.
- In game text and music have not changed from the original.
- Master Quest is confirmed as a second quest that requires the player to complete the game first to unlock.
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