Ok, this tool still works, but the instructions are out of date and use extremely outdated tools.
Things you'll need:
Hekate & Nyx
Lockpick_RCM
NxNandManager
SwitchSDTool (obviously)
1) Download the game and any updates to your SD card from eShop on stock.
2) Use Lockpick_RCM to dump SysNAND keys.
3) Use Hekate to dump eMMC SYS GPP Partitions (should only take a minute since it skips the USER partition)
4) Install the driver that comes with NxNandManager. Open NxNandManager and load the prod.keys file created with Lockpick_RCM.
5) Use NxNandManager to open the PRODINFO partition from the dump, and right click to decrypt and export. Save this as PRODINFO.bin in the same directory as SwitchSDTool.
6) Use NxNandManager to open the SYSTEM partition from the dump, and mount it as drive in windows.
7) Make a copy of prod.keys named keys.txt in the same directory as SwitchSDTool.
8) Open SwitchSDTool and set the SD Folder to the root of your SD card, and set System Path to the root of the mounted SYSTEM partition.
9) In my experience, I need to reload SwitchSDTool after changing these directories before the settings take effect for some reason. After reopening, all the buttons should work normally.
This is significantly simpler than the instructions listed with the tool. You only need to dump the SYS partitions which is much faster than dumping the entire NAND. You also don't need to lookup the eticket_rsa_kek (since lockpick dumps it).